IJBBB 2015 Vol.5(2): 100-110 ISSN: 2010-3638
doi: 10.17706/ijbbb.2015.5.2.100-110
doi: 10.17706/ijbbb.2015.5.2.100-110
Structure-to-Function Computational Prediction of a Subset of Ribosomal Proteins for the Small Ribosome Subunit
Edmund Ui-Hang Sim, Chin-Ming Er
Abstract—Extra-ribosomal functions of ribosomal proteins have been widely accepted albeit an incomplete understanding of these roles. Standard experimental studies have limited usefulness in defining the complete biological significance of ribosomal proteins. An alternative strategy is via in silico analysis. Here, we sought a sequence-to-structure-to-function approach to computationally predict the extra-ribosomal functions of a subset of ribosomal proteins of the small ribosome subunit, namely RPS12, RPS19, RPS20 and RPS24. Three-dimensional structure constructed from amino acid sequence was precisely matched with structural neighbours to extrapolate possible functions. Our analysis reveals new logical roles for these ribosomal proteins, of which represent important information for planning experimental and further in silico studies to elucidate their physiological roles.
Index Terms—Extra-ribosomal functions, RPS12, RPS19, RPS20, RPS24, structural neighbours, 3D modelling.
Department of Molecular Biology, Faculty of Resource Science and Technology, Universiti Malaysia Sarawak, Kota Samarahan, Sarawak, Malaysia (email: uhsim@frst.unimas.my).
Cite: Edmund Ui-Hang Sim, Chin-Ming Er, "Structure-to-Function Computational Prediction of a Subset of Ribosomal Proteins for the Small Ribosome Subunit," International Journal of Bioscience, Biochemistry and Bioinformatics vol. 5, no. 2, pp. 100-110, 2015.
General Information
ISSN: 2010-3638 (Online)
Abbreviated Title: Int. J. Biosci. Biochem. Bioinform.
Frequency: Quarterly
DOI: 10.17706/IJBBB
Editor-in-Chief: Prof. Ebtisam Heikal
Abstracting/ Indexing: Electronic Journals Library, Chemical Abstracts Services (CAS), Engineering & Technology Digital Library, Google Scholar, and ProQuest.
E-mail: ijbbb@iap.org
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